NWIPB OpenIR
The Complete Chloroplast Genomes of Two Lancea Species with Comparative Analysis
Chi, Xiaofeng1,2,3; Wang, Jiuli1,2,3; Gao, Qingbo1,3; Zhang, Faqi1,3; Chen, Shilong1,3
2018-03-01
Source PublicationMOLECULES
ISSN1420-3049
Volume23Issue:3
SubtypeArticle
AbstractThe genus Lancea is native to the Qinghai-Tibetan Plateau and consists of two species, Lancea tibetica Hook. f. et Thorns. and Lancea hirsuta Bonati. Here, we report the complete sequences of the chloroplast genomes of L. tibetica and L. hirsuta, which were 153,665 and 154,045 bp in length, respectively, and each included a pair of inverted repeated regions (25,624 and 25,838 bp in length, respectively) that were separated by a large single copy region (84,401 and 84,588 bp in length, respectively) and a smaller single copy region (18,016 and 17,781 bp in length, respectively). A total of 106 genes in L. tibetica and 105 in L. hirsuta comprised 79 protein-coding genes, and 4 ribosomal RNA (rRNA) genes, as well as 23 and 22 transfer RNA (tRNA) genes in L. tibetica and L. hirsuta, respectively. The gene order, content, and orientation of the two Lancea chloroplast genomes exhibited high similarity. A large number of informative repetitive sequences, including SSRs, were observed in both genomes. Comparisons of the genomes with those of three other Lamiales species revealed 12 highly divergent regions in the intergenic spacers and in the matK, rpoA, rps19, ndhF , ccsA, ndhD, and ycf1 coding regions. A phylogenomic analysis suggested that Lancea forms a monophyletic group that is closely related to the Glade composed of the families Phrymaceae, Paulowniaceae, and Rehmanniaceae.
KeywordMazaceae Laminales Organellar Genome Phylogenetic Analysis
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine ; Physical Sciences
DOI10.3390/molecules23030602
WOS KeywordLANCEA-TIBETICA ; SCROPHULARIACEAE ; PERFORMANCE ; PLACEMENT ; SEQUENCES ; SOFTWARE ; TOOL
Indexed BySCI
Language英语
Funding OrganizationApplied Basic Research Programs of Qinghai Province(2016-ZJ-761) ; Qinghai Provincial Key Laboratory of Crop Molecular Breeding(2017-ZJ-Y14)
WOS Research AreaBiochemistry & Molecular Biology ; Chemistry
WOS SubjectBiochemistry & Molecular Biology ; Chemistry, Multidisciplinary
WOS IDWOS:000428514100093
PublisherMDPI
Citation statistics
Cited Times:3[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://210.75.249.4/handle/363003/13827
Collection中国科学院西北高原生物研究所
Corresponding AuthorZhang, Faqi; Chen, Shilong
Affiliation1.Chinese Acad Sci, Northwest Inst Plateau Biol, Key Lab Adaptat & Evolut Plateau Biota, Xining 810001, Qinghai, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
3.Qinghai Prov Key Lab Crop Mol Breeding, Xining 810001, Qinghai, Peoples R China
Recommended Citation
GB/T 7714
Chi, Xiaofeng,Wang, Jiuli,Gao, Qingbo,et al. The Complete Chloroplast Genomes of Two Lancea Species with Comparative Analysis[J]. MOLECULES,2018,23(3).
APA Chi, Xiaofeng,Wang, Jiuli,Gao, Qingbo,Zhang, Faqi,&Chen, Shilong.(2018).The Complete Chloroplast Genomes of Two Lancea Species with Comparative Analysis.MOLECULES,23(3).
MLA Chi, Xiaofeng,et al."The Complete Chloroplast Genomes of Two Lancea Species with Comparative Analysis".MOLECULES 23.3(2018).
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