Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)

NWIPB OpenIR

	Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)
	Zhang, Xiaoxia; Zhang, Xiaofeng; Wang, Huan; Chen, Shilong; Cheng, Tingfeng; Shi, Shengbo; Zhou, Dangwei
	2021
发表期刊	MITOCHONDRIAL DNA PART B-RESOURCES
卷号	6 期号:1
摘要	Solanum japonense Nakai. (Solanaceae) is a traditional Chinese medicine and animal fodder in Asian continent. Here, the complete chloroplast genome sequence of S. japonense was determined by the Illumina Hiseq technology. The complete chloroplast genome of S. japonense was 155,415 bp and the GC content was 37.81%. The typical circular quadripartite structure was composed with two inverted repeat (IR) regions with 25,588 bp, a large single-copy (LSC) region (85,931 bp) and a small single-copy (SSC) region (18,344 bp). The chloroplast genome of S. japonense contained 132 unigenes, which contained 86 protein-coding genes, 37 tRNA and 8 rRNA genes and one pseudo-gene. Moreover, 183 SSRs were identified and 65% (119)of them located at LSC region. A Maximum-Likelihood (ML) phylogenetic analysis based on chloroplast genomes indicated that S. japonense was closely related to S.dulcamara, S.nigrum. Our results would provide a valuable resource for resource utilization and the phylogenetic studies of species of Dulcamara sect. in Solanaceae.
关键词	Solanum japonense Nakai chloroplast genome phylogenetic analysis
文献类型	期刊论文
条目标识符	http://210.75.249.4/handle/363003/60875
专题	中国科学院西北高原生物研究所
推荐引用方式 GB/T 7714	Zhang, Xiaoxia,Zhang, Xiaofeng,Wang, Huan,et al. Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)[J]. MITOCHONDRIAL DNA PART B-RESOURCES,2021,6(1).
APA	Zhang, Xiaoxia.,Zhang, Xiaofeng.,Wang, Huan.,Chen, Shilong.,Cheng, Tingfeng.,...&Zhou, Dangwei.(2021).Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae).MITOCHONDRIAL DNA PART B-RESOURCES,6(1).
MLA	Zhang, Xiaoxia,et al."Characterization of the complete chloroplast genome of traditional Chinese herb, Solanum japonense Nakai. (Solanaceae)".MITOCHONDRIAL DNA PART B-RESOURCES 6.1(2021).