Chromosome-level assembly of Gymnocypris eckloni genome

NWIPB OpenIR

	Chromosome-level assembly of Gymnocypris eckloni genome
	Wang, FY; Wang, LH; Liu, D; Gao, Q; Nie, MM; Zhu, SH; Chao, Y; Yang, CJ; Zhang, CF; Yi, RG; Ni, WL; Tian, F; Zhao, K; Qi, DL
	2022
发表期刊	SCIENTIFIC DATA
卷号	9 期号:1
摘要	Gymnocypris eckloni is widely distributed in isolated lakes and the upper reaches of the Yellow River and play significant roles in the trophic web of freshwater communities. In this study, we generated a chromosome-level genome of G. eckloni using PacBio, Illumina and Hi-C sequencing data. The genome consists of 23 pseudo-chromosomes that contain 918.68 Mb of sequence, with a scaffold N50 length of 43.54 Mb. In total, 23,157 genes were annotated, representing 94.80% of the total predicted protein-coding genes. The phylogenetic analysis showed that G. eckloni was most closely related to C. carpio with an estimated divergence time of similar to 34.8 million years ago. For G. eckloni, we identified a high-quality genome at the chromosome level. This genome will serve as a valuable genomic resource for future research on the evolution and ecology of the schizothoracine fish in the Qinghai-Tibetan Plateau.
收录类别	SCIE
文献类型	期刊论文
条目标识符	http://210.75.249.4/handle/363003/61138
专题	中国科学院西北高原生物研究所
推荐引用方式 GB/T 7714	Wang, FY,Wang, LH,Liu, D,et al. Chromosome-level assembly of Gymnocypris eckloni genome[J]. SCIENTIFIC DATA,2022,9(1).
APA	Wang, FY.,Wang, LH.,Liu, D.,Gao, Q.,Nie, MM.,...&Qi, DL.(2022).Chromosome-level assembly of Gymnocypris eckloni genome.SCIENTIFIC DATA,9(1).
MLA	Wang, FY,et al."Chromosome-level assembly of Gymnocypris eckloni genome".SCIENTIFIC DATA 9.1(2022).