Comparative analysis of the gastrointestinal microbial communities of bar-headed goose (Anser indicus) in different breeding patterns by high-throughput sequencing

doi:10.1016/j.micres.2015.10.003

NWIPB OpenIR

	Comparative analysis of the gastrointestinal microbial communities of bar-headed goose (Anser indicus) in different breeding patterns by high-throughput sequencing
	Wang, Wen 1,2; Cao, Jian 1,3; Li, Ji-Rong 1,3; Yang, Fang 1; Li, Zhuo 1; Li, Lai-Xing 1
	2016
发表期刊	MICROBIOLOGICAL RESEARCH
卷号	182 页码:59-67
文章类型	Article
摘要	The bar-headed goose is currently one of the most popular species for rare birds breeding in China. However, bar-headed geese in captivity display a reduced reproductive rate. The gut microbiome has been shown to influence host factors such as nutrient and energy metabolism, immune homeostasis and reproduction. It is therefore of great scientific and agriculture value to analyze the microbial communities associated with bar-headed geese in order to improve their reproductive rate. Here we describe the first comparative study of the gut microbial communities of bar-headed geese in three different breeding pattern groups by 16S rRNA sequences using the Illumina MiSeq platform. The results showed that Firmicutes predominated (58.33%) among wild bar-headed geese followed by Proteobacteria (30.67%), Actinobacteria (7.33%) and Bacteroidetes (3.33%). In semi-artificial breeding group, Firmicutes was also the most abundant bacteria (62.00%), followed by Bacteroidetes (28.67%), Proteo bacteria (4.20%), Actinobacteria (3.27%) and Fusobacteria (1.51%). The microbial communities of artificial breeding group were dominated by Firmicutes (60.67%), Fusobacteria (29.67%) and Proteo bacteria (9.33%). Wild bar-headed geese had a significant higher relative abundance of Proteobacteria and Actinobacteria, while semi-artificial breeding bar-headed geese had significantly more Bacteroidetes. The semi-artificial breeding group had the highest microbial community diversity and richness, followed by wild group, and then the artificial breeding group. The marked differences of genus level group-specific microbes create a baseline for future bar-headed goose microbiology research. (c) 2015 Elsevier GmbH. All rights reserved.
关键词	Bar-headed Goose Artificial Breeding Domestication Gut Microbiome
WOS标题词	Science & Technology ; Life Sciences & Biomedicine
DOI	10.1016/j.micres.2015.10.003
关键词[WOS]	GUT MICROBIOME ; FECAL MICROBIOTA ; EVOLUTION ; METABOLISM ; INFECTION ; WATERFOWL ; PHYLOGENY ; MUSCLE ; FLIGHT ; REVEAL
收录类别	SCI
语种	英语
项目资助者	State Forestry Administration Program(Y31I351B01) ; National Key Basic Research Program (973 Program) of China(2010CB530301)
WOS研究方向	Microbiology
WOS类目	Microbiology
WOS记录号	WOS:000367861000007
引用统计	被引频次：57[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://210.75.249.4/handle/363003/6498
专题	中国科学院西北高原生物研究所
作者单位	1.Chinese Acad Sci, Northwest Inst Plateau Biol, Key Lab Adaptat & Evolut Plateau Biota, Xining 810000, Qinghai Provinc, Peoples R China 2.Sichuan Univ, Coll Life Sci, Ctr Growth Metab & Aging, Chengdu 610000, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100101, Peoples R China
推荐引用方式 GB/T 7714	Wang, Wen,Cao, Jian,Li, Ji-Rong,et al. Comparative analysis of the gastrointestinal microbial communities of bar-headed goose (Anser indicus) in different breeding patterns by high-throughput sequencing[J]. MICROBIOLOGICAL RESEARCH,2016,182:59-67.
APA	Wang, Wen,Cao, Jian,Li, Ji-Rong,Yang, Fang,Li, Zhuo,&Li, Lai-Xing.(2016).Comparative analysis of the gastrointestinal microbial communities of bar-headed goose (Anser indicus) in different breeding patterns by high-throughput sequencing.MICROBIOLOGICAL RESEARCH,182,59-67.
MLA	Wang, Wen,et al."Comparative analysis of the gastrointestinal microbial communities of bar-headed goose (Anser indicus) in different breeding patterns by high-throughput sequencing".MICROBIOLOGICAL RESEARCH 182(2016):59-67.